Various Peer Reviewed Publications


Books:

Carvalho, John.  "The Crisis Of Our Time" (2014).


Research Publications (Articles):

Maria L.G. Quiloan, John Vu, John Carvalho*.  “E. faecalis Can Be Distinguished From E. faecium Via Differential Susceptibility to Antibiotics and Growth Characteristics On Mannitol Salt Agar.” (2012) Frontiers in Biology.  7(2): 167-177.
*Senior Author

John Vu and John Carvalho. “Enterococcus: review of its physiology, pathogenesis, diseases and the challenges it poses for clinical microbiology.” (2011) Frontiers in Biology6(5): 357-366.
*Senior Author

Carvalho, John.  “Importance of Clinical Microbiologists for U.S. Healthcare Infrastructure.”  (2011) Journal of Clinical Laboratory Science.  24(3): 136-141.

Carvalho, John.  “Our Common Enemy: Combatting the World’s Deadliest Viruses to Ensure Equity Healthcare in Developing Nations.” (2009) Zygon: The Journal of Religion and Science. 44: 141-153.

Carvalho, John. “The Agenda for Religion-and-Science: A Biologist’s Perspective on the Future of the Science-Religion Dialogue in the twenty-First Century.” (2008) Zygon: The Journal of Religion and Science. 43: 217-226.

Carvalho, John, Michelle M. Arnold and Max L. Nibert.  “Silencing and complementation of reovirus core and protein m2: Functional correlations with m2-microtubule association and differences between virus- and plasmid-derived m2.” (2007) Virology.  364, 301-316.

Carvalho, John.  “The Scientist as Statesman: Biologists and Third World Health.” (2007) Zygon: The Journal of Religion and Science.  42, 289-300.

Carvalho, John.  “Overview of the Structure of a Scientific Worldview.” (2006) Zygon: The Journal of Religion and Science.  41, 113-124.

Carvalho, John.  “Regulation of the GATA-Type Transcription Factor Gln3p by the Target of Rapamycin Protein (TOR).”  (Published 2004; Dissertation completed 2003) UMI Dissertation Publications, Ann Arbor, Michigan: Proquest Information and Learning Company.

Carvalho, John and X.F.S. Zheng.  “Domains of Gln3p interacting with karyopherins, Ure2p and the target of rapamycin protein (TOR).” (2003) Journal of Biological Chemistry.  278, 16878-16886.

Carvalho, John, Paula G. Bertram, Susan R. Wente, and X.F.S. Zheng.  “Phosphorylation Regulates the Interaction Between Gln3p and the Nuclear Import Factor Srp1p.”  (2001) Journal of Biological Chemistry. 276, 25359-25365.

Choi, Jae, Paula G. Bertram, Ryan Drenan, John Carvalho, Heather H. Zhou and X.F.S. Zheng.  “The FKBP12-Rapamycin-Associated Protein (FRAP) is a CLIP-170 Kinase.” (2002) EMBO Reports. 3, 988-994.

Bertram, Paula, Jae Choi, John Carvalho, Ting-Fung Chan, Walden Ai, and X.F.S. Zheng.  “Convergence of Snf1-Glucose and TOR-Nitrogen Signaling Pathways Onto Gln3p.”  (2002) Molecular and Cellular Biology. 22, 1246-1252.

Carvalho, John, Paula G. Bertram, and X.F.S. Zheng.  “On the Mechanism of Regulated Nucleocytoplasmic Transport of Gln3.” (2001) Yeast. 18, S176.

Chan, Ting-Fung, John Carvalho, Linda Riles, and X.F.S. Zheng. “A Chemical Genomics Approach Toward Understanding the Global Functions of the Target of Rapamycin Protein (TOR).” (2000) Proceedings of the National Academy of Sciences, U.S.A. 97, 13227-13232.

Bertram, Paula, Jae Choi, John Carvalho, Walden Ai, Chenbo Zeng, and X.F.S. Zheng.  “Tripartite Regulation of Gln3p By TOR, Ure2p and Phosphatases.” (2000) Journal of Biological Chemistry. 275, 35727-35733.

Carvalho, John.  “Genetic Analysis of the Ciguatera-Related Dinoflagellate Gambierdiscus toxicus.”  (1994) The Fort Johnson Research Review. 6, 2-28.


Research Publications (Abstracts):

John Vu and John Carvalho. (2012) “A Method For Speciating Enterococci Via The Arabinose Utilization Test.” Student Research Day, California State University Dominguez Hills.

John Vu and John Carvalho. (2012)  “The Citrate Permease Utilization Test Can Be Used To Distinguish Strains And Clinical Isolates Of Enterococcus faecalis From Enterococcus faecium In Medical Bacteriology Laboratories.” Student Research Day, California State University Dominguez Hills.

Quiloan, Maria L.G. and John Carvalho. (2011)  Enterococcus faecalis Can be Distinguished from Enterococcus faecium in Medical Bacteriology Laboratories on the Basis of Differential Susceptibility to Antibiotics in Antibiograms and Growth Characteristics on Mannitol Salt Agar.” Student Research Day, California State University Dominguez Hills, Carson, California.

Keleman Alex, David K. Imagawa, John Carvalho, and John Thomlinson. (2011) “The Efficacy of Combination and Metronomic Therapy of Gemcitabine and Sunitib on Pancreatic Cancer In Vitro and In Vivo.”  Student Research Day, California State University Dominguez Hills, Carson, California.

Keleman, Alex, David K. Imagawa, John Carvalho, Thomas Landefeld, and John Thomlinson. (2010) “Hepatitis Screening, Knowledge, and Prevalence Among Vietnamese-Americans in Orange County, California.”  Student Research Day, California State University Dominguez Hills, Carson, California.

Carvalho John, Michelle M. Arnold, and Max L. Nibert. (2006) “siRNA Silencing of Reovirus M1 mRNA/m2 Protein Reveals Strain Differences in Associated Replication Defects and Complementation.” 2006 American Society for Virology Conference, Madison, Wisconsin.

Carvalho, John, Jonghwa Kim, and Max L. Nibert. (2004) “Reovirus u2 Protein Possesses Classical Nuclear Import/Export Signal Sequences and Shuttles Between Nucleus and Cytoplasm in Infected Cells.” 2004 American Society for Virology Conference, Montreal, Canada.

Carvalho, John, Paula G. Bertram, Jae H. Choi, Ting-Fung Chan, Wandong Ai, and X.F. Steven Zheng.  (2002)  “Mechanistic Studies of Glucose and Amino Acid Signaling in Yeast Saccharomyces Cerevisiae involving TOR, Snf1, and the Transcription Factor Gln3.”  2002 Yeast Genetics and Molecular Biology Conference, Madison, Wisconsin.

Chan, Ting-Fung, John Carvalho, Linda Riles, and X.F.S. Zheng. (2002) “A Chemical Genomics Approach Toward Understanding the Global Functions of the Target of Rapamycin Protein (TOR).” 2002 Yeast Genetics and Molecular Biology Conference, Madison, Wisconsin.

Carvalho, John, Paula G. Bertram and X.F.S. Zheng. (2001) “Phosphorylation Regulates the Interaction Between Gln3p and its Nuclear Import Factor Srp1p.” 20th International Conference on Yeast Genetics and Molecular Biology in Prague, Czech Republic.

Carvalho, John and Austin J. Cooney. (1995) “Isolation of a Novel Orphan Receptor Gene Germ Cell Nuclear Factor (GCNF) From Mouse and Human cDNA Libraries.” Baylor College of Medicine Research Abstracts.




Research Publications (Science Commentaries, Book Reviews, Letters, and Popular Press Articles):

Carvalho, John.  Book Review: Darwin’s Cathedral, by David Sloan Wilson.  (2005)  Theology and Science. 3.3.

Carvalho, John.  Letter to the Editor: “Saving the Hybrids.” (2002) American Scientist. 90, 396-397.

Carvalho, John.  Book Review: Edward O. Wilson’s The Future of Life (2002) The CTNS  Bulletin. 21, 19-21.


Carvalho, John “Creative Insight.”  (2002)  Science and Spirit Magazine13, 7.

Carvalho, John and Ting-Fung Chan.  “The Stem Cell Controversy.”  (2001)  The National Catholic Bioethics Quarterly1, 483-484.

Carvalho, John“Biologists and Bioethicists Unite.”  (2001)  Science and Spirit Magazine12, 10.



Carvalho, John.  Letter to the Editor: “Macroevolution.” (1999)  The Talk Origins Archive.


Carvalho, John“Adaptation in Evolutionary Theory: Teleological or Telonomical?” (1999) Metanexus: Science and Religion.

Carvalho, John“The Scope of Evolutionary Reductionism in the Origination of Cultural Novelties.”  (1999)  Metanexus: Science and Religion.



Carvalho, John“Natural Theology vs. Religious Naturalism: Book Review of Ursula Goodenough’s The Sacred Depths of Nature.” (1999)  Metanexus: Science and Religion.



Carvalho, JohnBook review: Nature’s Destiny: How the Laws of biology Reveal Purpose in the Universe. (1999)  CTNS Bulletin19, 26-28.


Castro-Frenzal, Karla and John Carvalho.  “Biology and Medicine.” (1996) UD News, Science Column.

Carvalho, John.  "Genesis and Genetics." (1994) University of Dallas Rostrum. 3, 14-15.

Carvalho, John.  Letter to the Editor: "The Arrow of Evolution." (1993) Discover Magazine. 




Other Publications:

Carvalho, John.  Letter to the Editor:  “Cuts Will Hurt Universities.” (2008) Daily Breeze Newspaper.  A10.


Research Presentations/Symposiums/Conference Posters:


2003    John Carvalho. (Presentation): “Regulation of the GATA-type   Transcription Gln3p by Ure2p, Nutrients, and the Target of Rapamycin Protein (TOR).”   Harvard Medical School, Department of Molecular Genetics and Microbiology, Boston, MA.

2003    John Carvalho. (Presentation): “Regulation of Gln3p Involving Ure2p,     Nutrients, and  
            TOR.”  Massachusetts Institute of Technology, The Whitehead Institute, Cambridge, MA.

2002    John Carvalho, Paula G. Bertram, Jae H. Choi, Ting-Fung Chan, Wandong Ai, and X.F. 
            Steven Zheng. (Poster):  “Mechanistic Studies of Glucose and Amino Acid Signaling in Yeast 
            Saccharomyces Cerevisiae involving TOR, Snf1, and the Transcription Factor Gln3.”  2002 
            Yeast Genetics and Molecular Biology Conference, Madison, Wisconsin.

2002    Chan, Ting-Fung, John Carvalho, Linda Riles, and X.F.S. Zheng. (Poster): “A
            Chemical Genomics Approach Toward Understanding the Global Functions of
            the Target of Rapamycin Protein (TOR).” 2002 Yeast Genetics and Molecular
            Biology Conference, Madison, Wisconsin.

2001    John Carvalho, Paula G. Bertram and X.F.S. Zheng. “Phosphorylation Regulates the 
            Interaction Between Gln3p and its Nuclear Import Factor Srp1p.” (Poster): 20th International 
            Conference on Yeast Genetics and Molecular Biology in Prague, Czech Republic.  Sponsored 
            by the Czech Republic Academy of Sciences.

2000    John Carvalho. (Presentation):  “The TOR Signal Transduction Pathway.” University Wide 
            Cell Signaling Seminar Series.  Washington University School of Medicine, St. Louis, MO.

1999    John CarvalhoPresentation Attendance/Co-sponsor: The Eugenics Movement in America: 
            Dr. Garland Allen.  The Ethical Society of St. Louis.

1999    John Carvalho, Paula Bertram, Jae Choi, and X.F.S. Zheng. (Poster):  “TOR as Sensor 
            Linking Nitrogen Nutrients to Gene Expression.”  Molecular Genetics Program Retreat.  
             Washington University School of Medicine, Potosi, MO.

1998    Ting-Fung Chan, John Carvalho, Chenbo Zeng, Paula Bertram, and X.F.S. Zheng. (Poster):  
            “Target of Rapamycin.”  Molecular Genetics Program Retreat. Washington University School 
             of Medicine, Cedar Creek, MO.

1996    John CarvalhoConference Attendance:  The International Yeast Genetics and Molecular 
            Biology Conference, Madison, Wisconsin.

1996    John Carvalho. (Presentation):  Biophilosophy:  The Reductionist and Anti-Reductionist 
            Debate. Philosophy Department.  University of Dallas Braniff Graduate School.  Irving, TX.

1995    John Carvalho.  Symposium:  The National Science Foundation Bioethics Retreat.  Baylor
            College of Medicine, Houston, TX.

1995    John Carvalho (Presentation):  Isolation of a Novel Orphan Receptor Gene Germ Cell Nuclear
            Factor (GCNF) From Mouse and Human cDNA Libraries. University of Texas Southwestern 
            Medical Center at Dallas/University of Dallas   Alumni Association.  Dallas, TX.

1995    John Carvalho. (Presentation): Isolation of a Disease Gene in Male Infertility. Biology 
            Department Research Presentation Series, University of Dallas. Irving, TX.

1994    John Carvalho. (Presentation):  Population Genetics of Gambierdiscus toxicus. Grice Marine 
            Biological Laboratory, James Island, South Carolina.

1994    John Carvalho. (Awards Lecture): Genetic Analysis of the Ciguatera-Related     
            Dinoflagellate Gambierdiscus toxicus.  Medical University of South Carolina, Charleston, SC.

1994    John Carvalho. (Presentation): Genetic Analysis of the Ciguatera-Related Dinoflagellate 
            Gambierdiscus toxicus.  National Marine Fisheries Service Marine Biotoxins Division, Fort 
            Johnson, SC.